SNP Profiles of LP 1 /41 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCTCCGGTTCTCTAT
1._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
2._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
3._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
4._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
5._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
6._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
7._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
8._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
9._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
10._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
11._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
12._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
13._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
14._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
15._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
16._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
17._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
18._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
19._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
20._RUQ_353
__CC__TT________
21._RUQ_353
_-CC__TT_CC__TTTT__
22._LP_1_/41_[POU]
ATTTCC____CCCTGG_TT__
23._RUQ_353
ATTTCC____CCCTGG_TT__
24._RUQ_353
AT_CCAAAA_AAGG_GGAAAAGGAT
 1516171819202122232425262728
_Input profile
ACAGGGCCGGCTAATTGGATAACGGGAA
1._GC-05-148-4-01
ACAGGGCCGGCTAATTGGATAACGGGAA
2._GC-05-148-4-01
ACAGGGCCGGCTAATTGGATAACGGGAA
3._GC-05-148-4-01
ACAGGGCCGGCTAATTGGATAACGGGAA
4._GC-05-055-2-06
ACAGGGCCGGCTAATTGGATAACGGGAA
5._GC-05-055-2-06
ACAGGGCCGGCTAATTGGATAACGGGAA
6._GC-05-148-4-01
ACAGGGCCGGCTAATTGGATAACGGGAA
7._GC-05-055-2-06
ACAGGGCCGGCTAATTGGATAACGGGAA
8._GC-05-055-2-06
ACAGGGCCGGCTAATTGGATAACGGGAA
9._GC-05-148-4-01
ACAGGG_GGCTAATTGGATAACGGGAA
10._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
11._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
12._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
13._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
14._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
15._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
16._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
17._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
18._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
19._LP_1_/41_[POU]
_AG__GG____ATAA_GGAA
20._RUQ_353
_AGCT_________GG_
21._RUQ_353
___CG____GG_TTCCGG_
22._LP_1_/41_[POU]
_AG__GG____AATT_GGAT
23._RUQ_353
_AG__GG____AATT_GGAT
24._RUQ_353
ACAGGG_GGGGAGGGGGAATTGGCCAT
 2930313233343536373839404142
_Input profile
TTGGAGGGCCAAGTGGGTAACTAGCCGG
1._GC-05-148-4-01
TTGGAGGGCCAAGTGGGTAACTAGCCGG
2._GC-05-148-4-01
TTGGAGGGCCAAGTGGGTAACTAGCCGG
3._GC-05-148-4-01
TTGGAGGGCCAAGTGGGTAACTAGCCGG
4._GC-05-055-2-06
TTGGAGGGCCAAGTGGGTAACTAGCCGG
5._GC-05-055-2-06
TTGGAGGGCCAAGTGGGTAACTAGCCGG
6._GC-05-148-4-01
TTGGAGGGCCAAGTGGGTAACTAGCCGG
7._GC-05-055-2-06
TTGGAGGGCCAAGTGGGTAACTAGCCGG
8._GC-05-055-2-06
TTGGAGGGCCAAGTGGGTAACTAGCCGG
9._GC-05-148-4-01
TTGGAGGGCCAAGTGGGTAACTAGCCGG
10._LP_1_/41_[POU]
___GG_AAGT__AA____
11._LP_1_/41_[POU]
___GG_AAGT__AA____
12._LP_1_/41_[POU]
___GG_AAGT__AA____
13._LP_1_/41_[POU]
___GG_AAGT__AA____
14._LP_1_/41_[POU]
___GG_AAGT__AA____
15._LP_1_/41_[POU]
___GG_AAGT__AA____
16._LP_1_/41_[POU]
___GG_AAGT__AA____
17._LP_1_/41_[POU]
___GG_AAGT__AA____
18._LP_1_/41_[POU]
___GG_AAGT__AA____
19._LP_1_/41_[POU]
___GG_AAGT__AA____
20._RUQ_353
___GG_AA____TT___
21._RUQ_353
__GGGGCCAAGG__AGTT__GT
22._LP_1_/41_[POU]
___GG_AAGG__AG____
23._RUQ_353
___GG_AAGG__AG____
24._RUQ_353
AAAAGGGGCCAACCCCAAAGAAAGCCAC
 4344454647484950515253545556
_Input profile
TTTTAAAGAACCACGGAAGTTTCTCCTT
1._GC-05-148-4-01
TTTTAAAGAACCACGGAAGTTTCTCCTT
2._GC-05-148-4-01
TTTTAAAGAACCACGGAAGTTTCTCCTT
3._GC-05-148-4-01
TTTTAAAGAACCACGGAAGTTTCTCCTT
4._GC-05-055-2-06
TTTTAAAGAACCACGGAAGTTTCTCCTT
5._GC-05-055-2-06
TTTTAAAGAACCACGGAAGTTTCTCCTT
6._GC-05-148-4-01
TTTTAAAGAACCACGGAAGTTTCTCCTT
7._GC-05-055-2-06
TTTTAAAGAACCACGGAAGTTTCTCCTT
8._GC-05-055-2-06
TTTTAAAGAA_ACGGAAGTTTCTCCTT
9._GC-05-148-4-01
TTTTAAAGAACCACGGAAGTTTCTCCTT
10._LP_1_/41_[POU]
_TT_________CTCC_
11._LP_1_/41_[POU]
_TT_________CTCC_
12._LP_1_/41_[POU]
_TT_________CTCC_
13._LP_1_/41_[POU]
_TT_________CTCC_
14._LP_1_/41_[POU]
_TT_________CTCC_
15._LP_1_/41_[POU]
_TT_________CTCC_
16._LP_1_/41_[POU]
_TT_________CTCC_
17._LP_1_/41_[POU]
_TT_________CTCC_
18._LP_1_/41_[POU]
_TT_________CTCC_
19._LP_1_/41_[POU]
_TT_________CTCC_
20._RUQ_353
___GG__________
21._RUQ_353
TT__GG______CCCT_GG
22._LP_1_/41_[POU]
_CC_________CTCT_
23._RUQ_353
_CC_________CTCT_
24._RUQ_353
_GG_GGAGGG_GGAGACGGAGAGCC
 5758596061626364656667686970
_Input profile
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
1._GC-05-148-4-01
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
2._GC-05-148-4-01
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
3._GC-05-148-4-01
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
4._GC-05-055-2-06
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
5._GC-05-055-2-06
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
6._GC-05-148-4-01
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
7._GC-05-055-2-06
_CGCTCCAAGGGGCCAGGTGGAGCCCG
8._GC-05-055-2-06
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
9._GC-05-148-4-01
AGCGCTCCAAGGGGCCAGGTGGAGCCCG
10._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
11._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
12._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
13._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
14._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
15._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
16._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
17._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
18._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
19._LP_1_/41_[POU]
_CG_CCAAGG_CCAGGTGG___
20._RUQ_353
GG______CCAA_GGAG__
21._RUQ_353
-CCCTCTCC_GGCCAAGGGGAG__
22._LP_1_/41_[POU]
___CTCCCG_CCAAGGGG___
23._RUQ_353
_CC_CTCCCG_CCAAGGGG___
24._RUQ_353
GGGGAGAGCCCGGGCCAACCCCAG__
 7172737475767778798081828384
_Input profile
AACTCCAGACACAGACCGCCAAACCCCT
1._GC-05-148-4-01
AACTCCAGACACAGACCGCCAAACCCCT
2._GC-05-148-4-01
AACTCCAGACACAGACCGCCAAACCCCT
3._GC-05-148-4-01
AACTCCAGACACAGACCGCCAAACCCCT
4._GC-05-055-2-06
AACTCCAGACACAGACCGCCAAACCCCT
5._GC-05-055-2-06
AACTCCAGACACAGACCGCCAAACCCCT
6._GC-05-148-4-01
AACTCCAGACACAGACCGCCAAACCCCT
7._GC-05-055-2-06
AACTCCAGACACAGACCGCCAAACCCCT
8._GC-05-055-2-06
AACTCCAGACACAGACCGCCAAACCCCT
9._GC-05-148-4-01
AACTCCAGACACAGACCGCCAAACCCCT
10._LP_1_/41_[POU]
AACT_____ACCG___CCCT
11._LP_1_/41_[POU]
AACT_____ACCG___CCCT
12._LP_1_/41_[POU]
AACT_____ACCG___CCCT
13._LP_1_/41_[POU]
AACT_____ACCG___CCCT
14._LP_1_/41_[POU]
AACT_____ACCG___CCCT
15._LP_1_/41_[POU]
AACT_____ACCG___CCCT
16._LP_1_/41_[POU]
AACT_____ACCG___CCCT
17._LP_1_/41_[POU]
AACT_____ACCG___CCCT
18._LP_1_/41_[POU]
AACT_____ACCG___CCCT
19._LP_1_/41_[POU]
AACT_____ACCG___CCCT
20._RUQ_353
AG______CCCG__CC__
21._RUQ_353
_______CCCG__CCCT_
22._LP_1_/41_[POU]
AGTT_____CCCG___CTTT
23._RUQ_353
AGTT_____CCCG___CTTT
24._RUQ_353
_AACCGGACAC_CCCGGGAACCAGAA
 858687888990919293     
_Input profile
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
1._GC-05-148-4-01
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
2._GC-05-148-4-01
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
3._GC-05-148-4-01
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
4._GC-05-055-2-06
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
5._GC-05-055-2-06
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
6._GC-05-148-4-01
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
7._GC-05-055-2-06
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
8._GC-05-055-2-06
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
9._GC-05-148-4-01
TTTTAGCCTTGTCTATGGX_XX_XX_XX_XX_X
10._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
11._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
12._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
13._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
14._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
15._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
16._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
17._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
18._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
19._LP_1_/41_[POU]
TT_AG_TTGTCT__X_XX_XX_XX_XX_X
20._RUQ_353
CC__CC_TT___X_XX_XX_XX_XX_X
21._RUQ_353
__GGCCCCTT___X_XX_XX_XX_XX_X
22._LP_1_/41_[POU]
CC_GG_CCTTCT__X_XX_XX_XX_XX_X
23._RUQ_353
CC_GG_CCTTCT__X_XX_XX_XX_XX_X
24._RUQ_353
_AA__GGAAAGTTGGX_XX_XX_XX_XX_X

Input profile: LP_1_/41_[POU] GC-05-055-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._LP_1_/41_[POU] GC-05-148-4-01

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._LP_1_/41_[POU] GC-05-148-4-01

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

3._LP_1_/41_[POU] GC-05-148-4-01

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

4._LP_1_/41_[POU] GC-05-055-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._LP_1_/41_[POU] GC-05-055-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._LP_1_/41_[POU] GC-05-148-4-01

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._LP_1_/41_[POU] GC-05-055-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._LP_1_/41_[POU] GC-05-055-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._LP_1_/41_[POU] GC-05-148-4-01

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU] RUQ_353

66.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._LP_1_/41_[POU] RUQ_353

62.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._LP_1_/41_[POU]

56.6 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C796
 Dapeng Zhang, 2016

23._LP_1_/41_[POU] RUQ_353

56.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

39.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240